A laser frequency comb that enables radial velocity measurements with a precision of 1 cm s(-1)

Searches for extrasolar planets using the periodic Doppler shift of stellar spectral lines have recently achieved a precision of 60 cm s(-1) (ref. 1), which is sufficient to find a 5-Earth-mass planet in a Mercury-like orbit around a Sun-like star. To find a 1-Earth-mass planet in an Earth-like orbit, a precision of approximately 5 cm s(-1) is necessary. The combination of a laser frequency comb with a Fabry-Pérot filtering cavity has been suggested as a promising approach to achieve such Doppler shift resolution via improved spectrograph wavelength calibration, with recent encouraging results. Here we report the fabrication of such a filtered laser comb with up to 40-GHz (approximately 1-A) line spacing, generated from a 1-GHz repetition-rate source, without compromising long-term stability, reproducibility or spectral resolution. This wide-line-spacing comb, or 'astro-comb', is well matched to the resolving power of high-resolution astrophysical spectrographs. The astro-comb should allow a precision as high as 1 cm s(-1) in astronomical radial velocity measurements.     

A tiling resolution DNA microarray with complete coverage of the human genome

We constructed a tiling resolution array consisting of 32,433 overlapping BAC clones covering the entire human genome. This increases our ability to identify genetic alterations and their boundaries throughout the genome in a single comparative genomic hybridization (CGH) experiment. At this tiling resolution, we identified minute DNA alterations not previously reported. These alterations include microamplifications and deletions containing oncogenes, tumor-suppressor genes and new genes that may be associated with multiple tumor types. Our findings show the need to move beyond conventional marker-based genome comparison approaches, that rely on inference of continuity between interval markers. Our submegabase resolution tiling set for array CGH (SMRT array) allows comprehensive assessment of genomic integrity and thereby the identification of new genes associated with disease.     

Combining exchange rate forecasts: What is the optimal consensus measure?

In this paper a high-quality disaggregate database is utilized to examine whether individual forecasters produce efficient exchange rate predictions and also if the properties of the forecasts change when they are combined. The paper links a number of themes in the exchange rate literature and examines various methods of forecast combination. It is demonstrated, inter alia, that some forecasters are better than others, but that most are not as good as a naive no-change prediction. Combining forecasts adds to the accuracy of the predictions, but the gains mainly reflect the removal of systematic and unstable bias.     

Diplecogaster tonstricula,a new species of cleaning clingfish (Teleostei: Gobiesocidae) from the Canary Islands and Senegal,eastern Atlantic Ocean,with a review of the Diplecogaster-ctenocrypta species-group

The Diplecogaster-ctenocrypta species-group is reviewed; it comprises two species. The clingfish Diplecogaster ctenocrypta from the Canary Islands is redescribed. The new species Diplecogaster tonstricula, a facultative cleaner of other teleosts, is described on the basis of eight specimens and colour photos from Senegal and the Canary Islands, eastern Atlantic Ocean. The species is small, apparently not exceeding 23 mm total length; it is characterised by having nine dorsal-fin rays, eight anal-fin rays, 24–25 pectoral-fin rays, 14–15 principal caudal-fin rays, 13–16 rakers on third gill arch, pelvic disc without lateral papillae in region A, disc region B with two rows of weak papillae, interorbital distance 4.1–4.6 in head length, distance between disc and anus 14–17% of SL, head and body with 10–13 narrow vertical brownish bars, cheek with a white ocellus surrounded by black, and with a small black spot in the middle. The new species is compared with other species of the genus; a key to the six known species of the eastern Atlantic, Mediterranean and Black Sea and South African genus Diplecogaster is presented. A checklist is provided for the species of Diplecogaster and their synonyms.     

Potential contribution of respiration by Anabrus simplex (Mormon crickets) to net CO 2 exchange in three Great Basin ecosystems

Disturbance events can significantly influence net CO 2 exchange (NCE) in ecosystems. High densities of Anabrus simplex (Mormon crickets) periodically afflict large areas of the western USA; their sheer numbers could make them a significant source of CO 2 . We modeled cricket respiration at the ecosystem level using air and body temperatures and insect gas exchange measurements. Cricket CO 2 efflux values were compared to ecosystem CO 2 flux from eddy covariance measurements in 3 Great Basin ecosystems: a juniper woodland, a sagebrush shrubland, and a crested wheatgrass pasture. Mean respiration from Mormon crickets was 0.96 g CO 2 ? m –2 d –1 . Since Mormon crickets are present when NCE is otherwise near 0, they can potentially alter NCE between 20% (juniper woodland) and 60% (crested wheatgrass pasture). Transient pests such as Mormon crickets can be an important component of NCE.     

Association of Rhabdocline needle blight and epicormic branching in Douglas-fir

In northern Utah, Douglas-firs ( Pseudotsuga menziesii [Mirb.] Franco) with symptoms of Rhabdocline needle blight had a significantly higher frequency of epicormic branching than did healthy trees. It is not known whether Rhabdocline infection stimulates epicormy, or whether the proliferation of epicormics increases resistance to the disease.     

Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion

Prior studies have identified recurrent oncogenic mutations in colorectal adenocarcinoma and have surveyed exons of protein-coding genes for mutations in 11 affected individuals. Here we report whole-genome sequencing from nine individuals with colorectal cancer, including primary colorectal tumors and matched adjacent non-tumor tissues, at an average of 30.7× and 31.9× coverage, respectively. We identify an average of 75 somatic rearrangements per tumor, including complex networks of translocations between pairs of chromosomes. Eleven rearrangements encode predicted in-frame fusion proteins, including a fusion of VTI1A and TCF7L2 found in 3 out of 97 colorectal cancers. Although TCF7L2 encodes TCF4, which cooperates with β-catenin in colorectal carcinogenesis, the fusion lacks the TCF4 β-catenin-binding domain. We found a colorectal carcinoma cell line harboring the fusion gene to be dependent on VTI1A-TCF7L2 for anchorage-independent growth using RNA interference-mediated knockdown. This study shows previously unidentified levels of genomic rearrangements in colorectal carcinoma that can lead to essential gene fusions and other oncogenic events.     

Somatic mosaic IDH1 and IDH2 mutations are associated with enchondroma and spindle cell hemangioma in Ollier disease and Maffucci syndrome

Ollier disease and Maffucci syndrome are non-hereditary skeletal disorders characterized by multiple enchondromas (Ollier disease) combined with spindle cell hemangiomas (Maffucci syndrome). We report somatic heterozygous mutations in IDH1 (c.394C>T encoding an R132C substitution and c.395G>A encoding an R132H substitution) or IDH2 (c.516G>C encoding R172S) in 87% of enchondromas (benign cartilage tumors) and in 70% of spindle cell hemangiomas (benign vascular lesions). In total, 35 of 43 (81%) subjects with Ollier disease and 10 of 13 (77%) with Maffucci syndrome carried IDH1 (98%) or IDH2 (2%) mutations in their tumors. Fourteen of 16 subjects had identical mutations in separate lesions. Immunohistochemistry to detect mutant IDH1 R132H protein suggested intraneoplastic and somatic mosaicism. IDH1 mutations in cartilage tumors were associated with hypermethylation and downregulated expression of several genes. Mutations were also found in 40% of solitary central cartilaginous tumors and in four chondrosarcoma cell lines, which will enable functional studies to assess the role of IDH1 and IDH2 mutations in tumor formation.