A physical map of the mouse genome

A physical map of a genome is an essential guide for navigation, allowing the location of any gene or other landmark in the chromosomal DNA. We have constructed a physical map of the mouse genome that contains 296 contigs of overlapping bacterial clones and 16,992 unique markers. The mouse contigs were aligned to the human genome sequence on the basis of 51,486 homology matches, thus enabling use of the conserved synteny (correspondence between chromosome blocks) of the two genomes to accelerate construction of the mouse map. The map provides a framework for assembly of whole-genome shotgun sequence data, and a tile path of clones for generation of the reference sequence. Definition of the human-mouse alignment at this level of resolution enables identification of a mouse clone that corresponds to almost any position in the human genome. The human sequence may be used to facilitate construction of other mammalian genome maps using the same strategy.     

Mesoscale vertical motion and the size structure of phytoplankton in the ocean

Phytoplankton size structure is acknowledged as a fundamental property determining energy flow through 'microbial' or 'herbivore' pathways. The balance between these two pathways determines the ability of the ecosystem to recycle carbon within the upper layer or to export it to the ocean interior. Small cells are usually characteristic of oligotrophic, stratified ocean waters, in which regenerated ammonium is the only available form of inorganic nitrogen and recycling dominates. Large cells seem to characterize phytoplankton in which inputs of nitrate enter the euphotic layer and exported production is higher. But the size structure of phytoplankton may depend more directly on hydrodynamical forces than on the source of available nitrogen. Here we present an empirical model that relates the magnitude of mesoscale vertical motion to the slope of the size-abundance spectrum of phytoplankton in a frontal ecosystem. Our model indicates that the relative proportion of large cells increases with the magnitude of the upward velocity. This suggests that mesoscale vertical motion-a ubiquitous feature of eddies and unstable fronts-controls directly the size structure of phytoplankton in the ocean.     

Late Quaternary vegetation and climate in the Escalante River Basin on the central Colorado Plateau

Five alcoves (rock shelters) in the Forty-Mile Canyon—Willow Gulch area of the Escalante River Basin in southeastern Utah yielded rich deposits of late Quaternary macrobotanical remains. The deposits were sampled and the contents identified in order to construct a chronology of vegetational change. Fourteen radiocarbon dates indicate that the fossils were deposited between 12,690 and 7510 yr B.P. (years before present). Ninety-one plant taxa were identified, 62 to species. Six species were common to all alcoves: Gambel oak ( Quercus gambelii ), box-elder ( Acer negundo ), prickly pear ( Opuntia subgenus Platyopuntia), skunkbush ( Rhus aromatica var. trilobata ), serviceberry ( Amelanchier utahensis ), and Indian ricegrass ( Oryzopsis hymenoides ). Late Pleistocene samples (>11,000 yr B.P.) contain extralocal, elevationally depressed species such as Douglas fir ( Pseudotsuga menziesii ), spruce ( Picea sp.), and mountain mahogany ( Cercocarpus ledifolius ), and mesophytic species such as rose ( Rosa woodsii ) and water birch ( Betula occidentalis ). Early Holocene samples (11,000-8000 yr B.P.) contain no elevationally depressed conifers, and the remaining mesophytic species decrease in relative abundance. Reticulated hackberry ( Celtis reticulata ) becomes common. The terminal Early Holocene sample (8000-7000 yr B.P.) contains abundant Gambel oak and prickly pear, but little else. Paleoclimatic interpretations for the Late Pleistocene correspond well to those of most other workers on the Colorado Plateau. Climates that were wetter and at least seasonally cooler than they are today are inferred from the macrobotanical assemblage. However, the increased moisture is attributed to higher stream base levels and increased groundwater rather than directly to increased precipitation. Early Holocene climates are interpreted as warmer and drier than those of the Late Pleistocene but still wetter than the present climate. Groundwater levels appear to be decreasing due to stream entrenchment. Terminal Early Holocene climates were much warmer and at least seasonally drier. By the end of the period, groundwater levels had decreased so much that the alcoves were unable to sustain plant communities; stream base level was probably near the present level.     

Ancestral polyploidy in seed plants and angiosperms

Whole-genome duplication (WGD), or polyploidy, followed by gene loss and diploidization has long been recognized as an important evolutionary force in animals, fungi and other organisms, especially plants. The success of angiosperms has been attributed, in part, to innovations associated with gene or whole-genome duplications, but evidence for proposed ancient genome duplications pre-dating the divergence of monocots and eudicots remains equivocal in analyses of conserved gene order. Here we use comprehensive phylogenomic analyses of sequenced plant genomes and more than 12.6 million new expressed-sequence-tag sequences from phylogenetically pivotal lineages to elucidate two groups of ancient gene duplications-one in the common ancestor of extant seed plants and the other in the common ancestor of extant angiosperms. Gene duplication events were intensely concentrated around 319 and 192 million years ago, implicating two WGDs in ancestral lineages shortly before the diversification of extant seed plants and extant angiosperms, respectively. Significantly, these ancestral WGDs resulted in the diversification of regulatory genes important to seed and flower development, suggesting that they were involved in major innovations that ultimately contributed to the rise and eventual dominance of seed plants and angiosperms.     

基于神经网络的机器人阻抗控制研究

基于神经网络非线性补偿器原理,本文提出了一种机器人新型顺应控制方案,外力信号通过一个二阶阻抗模型来修正期望输入,神经网络非线性补偿器用于补偿机器人有界干扰和未建模动态,提出了机器人模型学习方案,仿真结果证明了学习过程的有效性以及顺应控制的渐近稳定性。