A novel reaction at low temperature between nucleotides and protein enhancing biological activity

Résumé Une protéine du foie, en partie purifiée, congelée en présence de nucléotides ou de thymine a montré un accroissement d'activité. Ceci résulte en une augmentation de 50 fois la valeur nutritive, lorsque ajoutée au milieu chimique défini pour la culture du nématodeCaenorhabiditis briggsae. Un changement physique de la protéine est postulé, à cause du changement de la rotation optique de l'absorption aux UV qui accompagne l'accroissement d'activité.

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This investigation was supported in part by Research Grant E-926 made to Kaiser Foundation by the National Institute of Allergy and Infectious Diseases, Public Health Service, Bethesda (Maryland).

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The authors acknowledge the valuable technical assistance of Mrs.Gladys Perez-Mendez and Mrs.Barbara Washauer Clarke.     

Extreme climate of the global troposphere and stratosphere in 1940-42 related to El Niño

Although the El Ni?o/Southern Oscillation phenomenon is the most prominent mode of climate variability and affects weather and climate in large parts of the world, its effects on Europe and the high-latitude stratosphere are controversial. Using historical observations and reconstruction techniques, we analyse the anomalous state of the troposphere and stratosphere in the Northern Hemisphere from 1940 to 1942 that occurred during a strong and long-lasting El Ni?o event. Exceptionally low surface temperatures in Europe and the north Pacific Ocean coincided with high temperatures in Alaska. In the lower stratosphere, our reconstructions show high temperatures over northern Eurasia and the north Pacific Ocean, and a weak polar vortex. In addition, there is observational evidence for frequent stratospheric warmings and high column ozone at Arctic and mid-latitude sites. We compare our historical data for the period 1940-42 with more recent data and a 650-year climate model simulation. We conclude that the observed anomalies constitute a recurring extreme state of the global troposphere-stratosphere system in northern winter that is related to strong El Ni?o events.     

An interplanetary shock traced by planetary auroral storms from the Sun to Saturn

A relationship between solar activity and aurorae on Earth was postulated long before space probes directly detected plasma propagating outwards from the Sun. Violent solar eruption events trigger interplanetary shocks that compress Earth's magnetosphere, leading to increased energetic particle precipitation into the ionosphere and subsequent auroral storms. Monitoring shocks is now part of the 'Space Weather' forecast programme aimed at predicting solar-activity-related environmental hazards. The outer planets also experience aurorae, and here we report the discovery of a strong transient polar emission on Saturn, tentatively attributed to the passage of an interplanetary shock--and ultimately to a series of solar coronal mass ejection (CME) events. We could trace the shock-triggered events from Earth, where auroral storms were recorded, to Jupiter, where the auroral activity was strongly enhanced, and to Saturn, where it activated the unusual polar source. This establishes that shocks retain their properties and their ability to trigger planetary auroral activity throughout the Solar System. Our results also reveal differences in the planetary auroral responses on the passing shock, especially in their latitudinal and local time dependences.     

Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica

Tunicate embryos and larvae have small cell numbers and simple anatomical features in comparison with other chordates, including vertebrates. Although they branch near the base of chordate phylogenetic trees, their degree of divergence from the common chordate ancestor remains difficult to evaluate. Here we show that the tunicate Oikopleura dioica has a complement of nine Hox genes in which all central genes are lacking but a full vertebrate-like set of posterior genes is present. In contrast to all bilaterians studied so far, Hox genes are not clustered in the Oikopleura genome. Their expression occurs mostly in the tail, with some tissue preference, and a strong partition of expression domains in the nerve cord, in the notochord and in the muscle. In each tissue of the tail, the anteroposterior order of Hox gene expression evokes spatial collinearity, with several alterations. We propose a relationship between the Hox cluster breakdown, the separation of Hox expression domains, and a transition to a determinative mode of development.     

Plate-wide stress relaxation explains European Palaeocene basin inversions

During Late Cretaceous and Cenozoic times, many Palaeozoic and Mesozoic rifts and basin structures in the interior of the European continent underwent several phases of inversion (the process of shortening a previously extensional basin). The main phases occurred during the Late Cretaceous and Middle Palaeocene, and have been previously explained by pulses of compression, mainly from the Alpine orogen. Here we show that the main phases differed both in structural style and cause. The Cretaceous phase was characterized by narrow uplift zones, reverse activation of faults, crustal shortening, and the formation of asymmetric marginal troughs. In contrast, the Middle Palaeocene phase was characterized by dome-like uplift of a wider area with only mild fault movements, and formation of more distal and shallow marginal troughs. A simple flexural model explains how domal, secondary inversion follows inevitably from primary, convergence-related inversion on relaxation of the in-plane tectonic stress. The onset of relaxation inversions was plate-wide and simultaneous, and may have been triggered by stress changes caused by elevation of the North Atlantic lithosphere by the Iceland plume or the drop in the north-south convergence rate between Africa and Europe.     

煤层气缝网压裂技术研究

为解决煤层气活性水改造效果差的难题,基于煤层发育被方解石充填的天然裂缝网络、压裂液滤失量大的特性,提出了新的缝网压裂思路,研制与煤层相适应的复合压裂液体系。潜在酸压裂液酸蚀充填矿物,使裂缝恢复畅通,形成相连通的复杂裂缝网络;清洁压裂液携砂,支撑压开的裂缝。探讨了该思路的可行性和优势,以及与页岩气、砂岩气缝网压裂的区别。分析了沁水盆地南部3号煤和15号煤地质特征,研制了相应的潜在酸压裂液和清洁压裂液,形成"潜在酸酸蚀裂缝充填矿物,清洁压裂液携砂"的缝网压裂技术。与常规活性水压裂对比表明,3号和15号煤层缝网压裂产量高,见气普遍更早。3号煤压裂支撑剂用量更少,15号煤煤层气开发取得历史突破。实践表明煤层气缝网压裂具有可行性。     

Solution structure of a minor and transiently formed state of a T4 lysozyme mutant

Proteins are inherently plastic molecules, whose function often critically depends on excursions between different molecular conformations (conformers). However, a rigorous understanding of the relation between a protein's structure, dynamics and function remains elusive. This is because many of the conformers on its energy landscape are only transiently formed and marginally populated (less than a few per cent of the total number of molecules), so that they cannot be individually characterized by most biophysical tools. Here we study a lysozyme mutant from phage T4 that binds hydrophobic molecules and populates an excited state transiently (about 1?ms) to about 3% at 25?°C (ref. 5). We show that such binding occurs only via the ground state, and present the atomic-level model of the 'invisible', excited state obtained using a combined strategy of relaxation-dispersion NMR (ref. 6) and CS-Rosetta model building that rationalizes this observation. The model was tested using structure-based design calculations identifying point mutants predicted to stabilize the excited state relative to the ground state. In this way a pair of mutations were introduced, inverting the relative populations of the ground and excited states and altering function. Our results suggest a mechanism for the evolution of a protein's function by changing the delicate balance between the states on its energy landscape. More generally, they show that our approach can generate and validate models of excited protein states.     

Enterotypes of the human gut microbiome

Our knowledge of species and functional composition of the human gut microbiome is rapidly increasing, but it is still based on very few cohorts and little is known about variation across the world. By combining 22 newly sequenced faecal metagenomes of individuals from four countries with previously published data sets, here we identify three robust clusters (referred to as enterotypes hereafter) that are not nation or continent specific. We also confirmed the enterotypes in two published, larger cohorts, indicating that intestinal microbiota variation is generally stratified, not continuous. This indicates further the existence of a limited number of well-balanced host-microbial symbiotic states that might respond differently to diet and drug intake. The enterotypes are mostly driven by species composition, but abundant molecular functions are not necessarily provided by abundant species, highlighting the importance of a functional analysis to understand microbial communities. Although individual host properties such as body mass index, age, or gender cannot explain the observed enterotypes, data-driven marker genes or functional modules can be identified for each of these host properties. For example, twelve genes significantly correlate with age and three functional modules with the body mass index, hinting at a diagnostic potential of microbial markers.