Clustering criteria for discrete data and latent class models

We show that a well-known clustering criterion for discrete data, the information criterion, is closely related to the classification maximum likelihood criterion for the latent class model. This relation can be derived from the Bryant-Windham construction. Emphasis is placed on binary clustering criteria which are analyzed under the maximum likelihood approach for different multivariate Bernoulli mixtures. This alternative form of criterion reveals non-apparent aspects of clustering techniques. All the criteria discussed can be optimized with the alternating optimization algorithm. Some illustrative applications are included.

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Résumé Nous montrons que le critère de classification de l'information, souvent utilisé pour les données discrètes, est très lié au critère du maximum de vraisemblance classifiante appliqué au modèle des classes latentes. Ce lien peut être analysé sous l'approche de la paramétrisation de Bryant-Windham. L'accent est mis sur le cas des données binaires qui sont analysées sous l'approche du maximum de vraisemblance pour les mélanges de distributions multivariées de Bernoulli. Cette forme de critère permet de mettre en évidence des aspects cachés des méthodes de classification de données binaires. Tous les critères envisagés ici peuvent être optimisés avec l'algorithme d'optimisation alternée. Des exemples concluent cet article.

     

Human myeloperoxidase activity is inhibited in vitro by quercetin. Comparison with three related compounds

Summary Quercetin is an effective inhibitor of human myeloperoxidase (MPO) activity, both with purified enzyme (IC₅₀=3.5 M) and in a system using stimulated human neutrophils. Quercetin is significantly more potent than three other related compounds (rutin, rutin sulfate and troxerutin) and than methimazole, a previously-known myeloperoxidase inhibitor. The inhibitory activity of quercetin is of the competitive type. Moreover, quercetin is directly able to scavenge hypochlorous acid (HOCl), a chlorinated species generated by the, MPO/H₂O₂/Cl^– system.     

Homeotic transformation of the occipital bones of the skull by ectopic expression of a homeobox gene.

Murine Hox genes have been postulated to play a role in patterning of the embryonic body plan. Gene disruption studies have suggested that for a given Hox complex, patterning of cell identity along the antero-posterior axis is directed by the more 'posterior' (having a more posterior rostral boundary of expression) Hox proteins expressed in a given cell. This supports the 'posterior prevalence' model, which also predicts that ectopic expression of a given Hox gene would result in altered structure only in regions anterior to its normal domain of expression. To test this model further, we have expressed the Hox-4.2 gene more rostrally than its normal mesoderm anterior boundary of expression, which is at the level of the first cervical somites. This ectopic expression results in a homeotic transformation of the occipital bones towards a more posterior phenotype into structures that resemble cervical vertebrae, whereas it has no effect in regions that normally express Hox-4.2. These results are similar to the homeotic posteriorization phenomenon generated in Drosophila by ectopic expression of genes of the homeotic complex HOM-C (refs 7-10; reviewed in ref. 3).     

Gelsolin-derived familial amyloidosis caused by asparagine or tyrosine substitution for aspartic acid at residue 187.

Dominantly inherited familial amyloidosis, Finnish type (FAF) is caused by the accumulation of a 71-amino acid amyloidogenic fragment of mutant gelsolin (GSN). FAF is common in Finland but is very rare elsewhere. In Finland and in two American families, the mutation is a G654A transition leading to an Asp to Asn substitution at residue 187. We found the same mutation in a Dutch family but a Danish FAF family had a G654T mutation, predicting Asp to Tyr at residue 187. We also found the G654T transversion in a Czech family. Using GSN polymorphisms, different haplotypes were found in the Danish and Czech families. We conclude that substitution of the uncharged Asn or Tyr for the acidic Asp at residue 187 creates a conformation that may be preferentially amyloidogenic for GSN.     

Induction, by 5-bromo-2'-deoxyuridine, of a "foamy" virus previously undetected in hamster cells transformed by SV40]

TSV5 clone 2 cells in normal conditions of culture contain only an expressed RNA virus (R-type virus). However, exposure of the cells to 5-bromo-2'-deoxyuridine with dexamethasone, induced synthesis of a syncitium-forming ("Foamy") virus. In other hamster cell lines, the same treatment fails to induce a "foamy" virus. The origin of this "foamy" virus is discussed.     

Subcellular distribution of catecholamines and enzymes in human neuroblastoma

Résumé Dans 18 cas de neuroblastome humain la noradrénaline (NA) et la dopamine--hydroxylase présentent des profils de distribution intracellulaire identiques, suggérant un stockage dans la même particule. Le contenu en NA de ces particules n'est pas inférieur à celui des particules du nerf splénique; on peut en conclure qu'un stockage défectueux de NA dans les cas de neuroblastome est peu probable.

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The authors are grateful to Prof.F. Derom (Surgical Clinic, University of Ghent Medical School), Prof.R. Eeckels and Prof.E. Eggermont (Paediatric Clinic, University of Leuven Medical School), Prof.A. Lacquet and Prof.J. Gruwez (Surgical Clinic, University of Leuven Medical School), Dr.G. Delalieux, Dr.F. Delange, Dr.P. De Mol, Dr.R. Denis, Dr.R. Maurus and Dr.J. Otten (Paediatric Clinic, University of Brussels Medical School) and Dr.W. Mattheiem (Surgical Clinic, Jules Bordet Institute, Brussels) for making the tumors available to them.     

Localization of peroxidase activity inTrypanosoma cruzi microbodies

Summary Electron microscopic observation ofTrypanosoma cruzi epimastigotes reveals the presence of microbody-like structures (microperoxisomes) in which 3,3-diaminobenzidine (DAB) is peroxidized to electron-opaque material. The role of peroxidase in DAB peroxidation is supported by the enzyme demonstration in disrupted epimastigotes and the microbody-containing cell fractions.This investigation was supported by grants from Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) and the Special Fund for the Study of Chagas Disease (Subsecretaría de Ciencia y Tecnología de la Nación).     

Effects of scavengers of superoxide radicals, hydrogen peroxide, singlet oxygen and hydroxyl radicals on malondialdehyde generation from arachidonic acid by bovine seminal vesicle microsomes

Superoxide dismutase, catalase and sodium formate did not inhibit the formation of malondialdehyde (MDA) from arachidonic acid, suggesting that O2-., H2O2 and OH. are not involved in the enzymatical oxidation of arachidonic acid. Sodium azide was found to be an inhibitor of MDA production.     

Schnee als kristallines Aggregat

Summary The newly fallen snow exhibits in its large variety of form all the changes in the atmospheric conditions (temperature, moisture, wind), and is a divided, labile matter. After the deposit, the cubic weight increases through the dead weight and the intercrystalline forces. These latter are closely connected with the metamorphosis of the crystals of newly fallen snow, basing on a stability of form. It appears that the snow crystal is covered with a superficial layer of fluid-like properties, and that the surface expansion is responsible for the first phase of the transformation. For the further change into the coarse grained old snow temporal and local differences are necessary. This has been found by observation of nature and of laboratory experiments, and in both cases were the results the same. The snow aggregate possesses, as a whole, a remarkable plasticity; the relations of this latter to the crystal plasticity is, at present, being examined by means of deformation tests. Of the characteristics of the plasticity of crystals a certain firmness and recovery can be observed partly, however, obscured by an elastic after-effect up till now never observed in snow. Of a slow limit there is only a suggestion. Besides mechanical mensurations, microscopic tests are being made on thin grinding plates to get at the individual proceedings.     

GMP-stimulation of the cyanide-insensitive mitochondrial respiration in heat-shocked conidia ofNeurospora crassa

Summary In mitochondria of heat-shocked conidia ofNeurospora exogenous NADH and succinate were oxidized mainly via the alternative, hydroxamate-sensitive pathway (70%) and only 30% via the cytochromic, cyanide-sensitive pathway which was predominant in untreated conidia; the alternative oxidase pathway was markedly stimulated by guanosine 5-monophosphate (GMP).We are grateful to Mrs A. Cattaneo for her skillful technical assistance.