靶向survivin基因的shRNA慢病毒载体的构建及其对膀胱癌EJ细胞凋亡的影响

目的:构建survivin基因特异性shRNA慢病毒干扰载体,转染膀胱癌EJ细胞,研究survivin基因在膀胱癌细胞株中的表达抑制情况,观察survivin shRNA慢病毒载体对EJ细胞凋亡的影响.方法:以survivin基因为靶标设计shRNA干扰序列,克隆至p SIH1-H1-cop GFP慢病毒载体.干扰载体鉴定正确后转染膀胱癌细胞株EJ细胞,荧光显微镜下观察GFP表达情况,实时荧光定量PCR检测survivin基因mRNA含量变化,Western blotting法检测survivin蛋白表达,Annexin V-FITC/PI双染法检测EJ细胞凋亡情况.结果:PCR扩增鉴定、DNA测序证实survivin慢病毒干扰载体构建成功;EJ细胞经干扰载体处理后,EJ细胞survivin基因mRNA水平下调了73.33%,蛋白表达受到显著抑制,EJ细胞凋亡率达到24.39%.结论:成功构建了靶向survivin基因的shRNA重组慢病毒干扰载体,可以显著降低转染细胞survivin基因的表达水平,并有效提高膀胱癌细胞凋亡率.     

干涉UBXN1慢病毒颗粒制备及稳定细胞系的建立

构建并鉴定UBXN1-shRNA慢病毒表达载体,以便应用RNAi技术以及慢病毒感染系统建立稳定干涉细胞系并进一步研究UBXN1的功能。将携带不同特异性干涉序列的DNA片段插入PLKO.1载体中构建慢病毒表达载体,并制备慢病毒颗粒。将慢病毒颗粒感染U2OS细胞,建立稳定干涉细胞系,应用real-time PCR和western blot技术分别检测U2OS细胞中UBXN1 mRNA和蛋白质水平的表达差异。重组克隆经酶切证实shRNA正确插入慢病毒载体,DNA测序证实插入的序列正确,western blot检测证实设计的五条shRNA干扰序列有效的敲低U2OS细胞中内源性UBXN1的表达。成功制备UBXN1的慢病毒干涉颗粒,并建立UBXN1稳定下调的U2OS细胞系。     

慢病毒介导的RNA干扰抑制白血病细胞增殖的应用

通过慢病毒载体介导的RNA干扰(RNAi)技术,沉默成人T细胞白血病(ATL)中关键的病毒基因HBZ,并研究RNA干扰后对白血病细胞增殖的影响.首先根据HBZ基因序列设计RNA干扰片段,构建其慢病毒载体,并将其包装成病毒.然后用HBZ siRNA慢病毒感染白血病细胞株TL-Om1,通过RT-PCR和Western blot检测HBZ基因和蛋白表达情况,MTT技术检测沉默HBZ后TL-Om1细胞的增殖情况,利用RT-PCR检测病毒感染后下游生长相关基因的表达.实验结果表明:利用慢病毒介导的RNA干扰技术能有效降低HBZ的表达,进而抑制了白血病细胞的增殖;沉默HBZ后,细胞内E2F1,PCNA和Myc等下游生长相关基因的表达受到了明显抑制.这将为慢病毒介导的RNA干扰技术应用于临床治疗成人T细胞白血病提供重要的实验依据.     

慢病毒载体及其介导的RNA干扰在基因治疗中的应用研究

主要就慢病毒载体及其介导的RNA干扰技术在基因治疗中的应用研究进行了综述,并对其在该领域具有的广阔前景进行了展望.慢病毒载体作为一种新型的载体,可有效地将携带的目的基因导入宿主细胞,并将其整合到宿主细胞基因组中,从而使目的基因得以持久稳定地表达.该载体因具有高感染性、高表达效率及不易诱发宿主免疫反应等优点,已成为基因治疗研究中的一个重要工具.RNA干扰技术可以特异性抑制或关闭特定基因的表达,因此该技术可广泛应用在基因功能探究和恶性肿瘤治疗等领域.由慢病毒载体介导的RNA干扰技术能持久、稳定、特异性地抑制各类细胞中特定基因的表达,在病毒感染、肿瘤等疾病的基因治疗中被广泛应用,成为生物医学领域的新热点.     

人血管紧张素Ⅱ2型受体AT2R重组细胞系的构建与鉴定

目的:构建人血管紧张素Ⅱ2型受体(hAT2R)过表达稳定细胞系,探讨AT2R激动剂Compound 21等对前列腺癌细胞的作用及机制.方法:构建含hAT2R基因的慢病毒表达载体pLV-CMV-hAT2R-IRES-eGFP并包装成慢病毒.将重组慢病毒载体pLV-CMV-IRES-eGFP-hAT2R感染前列腺癌细胞,并利用流式细胞术筛选出单克隆细胞株,RT-PCR及Western blot方法检测重组细胞系中hAT2R表达水平,使用AT2R激动剂CGP42112检测受体功能.结果:重组慢病毒载体感染PC-3、DU145前列腺癌细胞24 h后均能观察到eGFP表达,用流式细胞术分别筛选出单克隆细胞株,RT-PCR及Western blot检测结果显示目的基因hAT2R在两株重组细胞系中表达显著升高,CGP42112处理24 h后,重组细胞系细胞活力较正常PC-3、DU145细胞显著降低.结论:成功构建hAT2R过表达稳定细胞系.     

Jab1基因的RNAi对乳腺癌MCF-7细胞增殖和迁移的影响

为探讨Jab1基因在乳腺癌细胞中的生物学功能,进一步揭示其作用的分子机制.首先在乳腺癌细胞MCF-7中,成功建立了慢病毒介导的Jab1基因的RNAi系统,并通过CCK8细胞增殖实验和细胞划痕实验证实Jab1基因表达的干扰使得MCF-7细胞的增殖和迁移发生显著的下降,细胞周期分析表明,干扰Jab1的表达能增加MCF-7细胞sub G1期的比例,诱导凋亡;此外,通过RT-PCR和Western blot实验首次发现Jab1能调控TBHS1的表达,添加甲基化转移酶抑制剂5-Aza-dC能抑制Jab1表达干扰介导的THBS1表达下调,提示Jab1可通过甲基化的表观遗传学途径调控THBS1基因的表达.     

Cyclin E分子siRNA慢病毒载体的构建及其对骨肉瘤细胞系sosp9607的影响

设计筛选针对人cyclin E分子的siRNA序列,构建相应的siRNA慢病毒载体,检测其对骨肉瘤细胞系Sosp9607胞内cyclin E分子表达水平的影响.首先设计并合成4对siRNA双链寡聚核苷酸,与cyclin E分子真核表达载体共同转染293T细胞.挑选出最有效抑制cyclin E表达的序列,应用基因工程技术,将该序列连接于慢病毒载体pLKO.1中,构建携带针对目的基因cyclin E的siRNA慢病毒载体pLKO-CE.使用慢病毒包装质粒混合物和构建好的慢病毒载体共转染293T细胞,收获病毒上清,感染Sosp9607细胞系,对病毒感染后抑制cyclinE表达的效果进行检测.结果在4条针对cyclin E分子设计的siRNA序列中,siRNA-464最为有效的抑制了外源性cyclin E分子的表达;带有该序列的慢病毒载体pLKO-CE可以完全抑制Sosp9607细胞中天然分子的表达,引起Sosp9607细胞生物学行为的改变:G1期细胞增多,S期减少,细胞增殖受抑制.说明应用基因工程技术成功构建了针对cyclin E分子的RNA干扰慢病毒载体,可有效抑制骨肉瘤细胞cyclin E的表达,使肿瘤细胞增殖减缓,为深入研究针对cyclin E的基因治疗方案的临床前实验研究提供了实验证据和理论依据.     

小鼠Sirt3基因过表达慢病毒载体的构建及其表达鉴定

构建小鼠Sirt3基因过表达慢病毒载体,检测人神经母细胞瘤细胞(SK-N-SH细胞)感染Sirt3基因过表达慢病毒后Sirt3 mRNA和蛋白的表达,为在细胞和动物水平研究Sirt3的作用提供新的途径和工具。利用Genebank检索的小鼠Sirt3基因序列,人工合成法合成小鼠Sirt3基因的c DNA片段,将其克隆至慢病毒载体p CDH-CMV-MCS-EF1-cop GFP中,构建慢病毒表达质粒。进行酶切及测序验证后,将慢病毒表达质粒连同辅助包装原件载体质粒共同转染入293T细胞,收集上清,测定病毒滴度。用Sirt3基因过表达慢病毒感染SK-N-SH细胞,即为Sirt3过表达组(Sirt3);用空载体慢病毒感染的SK-N-SH细胞为空载体组(GFP);未感染病毒的SK-N-SH细胞为对照组(CON)。收集细胞后,用Real-time PCR法检测各组细胞Sirt3 mRNA的水平;用Western blotting法检测各组细胞Sirt3蛋白的表达。Sirt3基因过表达慢病毒载体构建成功,病毒滴度为1.0×10~9TU/m L。Sirt3组SK-N-SH细胞的Sirt3 mRNA和Sirt3蛋白水平均显著高于GFP组和CON组(P0.01)。成功构建的Sirt3基因过表达慢病毒载体具备高效感染力,能在SK-N-SH细胞高效过表达Sirt3,本研究结果为今后进一步在神经细胞和模型动物中研究Sirt3的作用提供了新的途径和工具。     

CD226分子siRNA慢病毒载体的构建和鉴定

为设计筛选针对人CD226分子的siRNA序列,构建相应的siRNA慢病毒载体,检测其对Jurkat/E6细胞膜表面天然CD226分子表达水平的影响,首先设计并合成4对siRNA双链寡聚核苷酸,与CD226分子真核表达载体共同转染293T细胞,挑选出最有效抑制CD226表达的序列。应用基因工程技术,将该序列连接于慢病毒载体pLKO.1中,构建携带针对目的基因CD226的siRNA慢病毒载体。使用慢病毒包装质粒混合物和构建好的慢病毒载体共转染293T细胞,收集上清,感染Jurkat/E6细胞系,对病毒感染效果进行检测。结果在4条针对CD226分子设计的siRNA序列中,siRNA—513最为有效的抑制了外源性CD226分子的表达,带有该序列的慢病毒载体pLKO—CD226可以完全抑制Jurkat/E6细胞上天然分子的表达。说明应用基因工程技术成功构建了针对CD226分子的RNA干扰慢病毒载体,为深入研究人类黏附分子CD226在机体免疫功能方面提供了技术支持。     

FTO过表达对小鼠胰岛β细胞功能的影响以及全基因组表达谱变化研究

为了研究肥胖基因FTO过表达对小鼠胰岛β细胞功能的影响以及基因表达谱的变化,构建小鼠FTO基因过表达慢病毒载体,包装慢病毒颗粒并感染小鼠胰岛MIN6细胞.利用QPCR和WesternBlot技术检测FTO基因在MIN6细胞中过表达情况,并检测葡萄糖刺激检测胰岛素的释放情况,进一步利用小鼠全基因芯片检测FTO过表达对小鼠胰岛MIN6细胞表达谱的影响.结果表明：慢病毒载体成功介导了FTO在MIN6细胞中过表达,FTO过表达可以显著抑制MIN6细胞的胰岛素释放.表达芯片的结果显示FTO改变MIN6细胞表达谱,发现多达922个的差异基因.FTO过表达改变了小鼠胰岛细胞的表达谱,差异基因通过一些重要信号通路影响小鼠胰岛β细胞的生物学功能.     

Characterization of Ordovician carbonate reservoirs, southeastern Saskatchewan, Canada

The discovery of the prolific Ordovician Red River reservoirs in 1995 in southeastern Saskatchewan was the catalyst for extensive exploration activity which resulted in the discovery of more than 15 new Red River pools. The best yields of Red River production to date have been from dolomite reservoirs. Understanding the processes of dolomitization is, therefore, crucial for the prediction of the connectivity, spatial distribution and heterogeneity of dolomite reservoirs.The Red River reservoirs in the Midale area consist of 3～4 thin dolomitized zones, with a total thickness of about 20 m, which occur at the top of the Yeoman Formation. Two types of replacement dolomite were recognized in the Red River reservoir: dolomitized burrow infills and dolomitized host matrix. The spatial distribution of dolomite suggests that burrowing organisms played an important role in facilitating the fluid flow in the backfilled sediments. This resulted in penecontemporaneous dolomitization of burrow infills by normal seawater. The dolomite in the host matrix is interpreted as having occurred at shallow burial by evaporitic seawater during precipitation of Lake Almar anhydrite that immediately overlies the Yeoman Formation. However, the low δ18O values of dolomited burrow infills (-5.9‰～ -7.8‰, PDB) and matrix dolomites (-6.6‰～ -8.1‰, avg. -7.4‰ PDB) compared to the estimated values for the late Ordovician marine dolomite could be attributed to modification and alteration of dolomite at higher temperatures during deeper burial, which could also be responsible for its 87Sr/86Sr ratios (0.7084～0.7088) that are higher than suggested for the late Ordovician seawaters (0.7078～0.7080). The trace amounts of saddle dolomite cement in the Red River carbonates are probably related to "cannibalization" of earlier replacement dolomite during the chemical compaction.     

A computer generator for randomly layered structures

AcomputergeneratorforrandomlylayeredstructuresYUJia shun1,2,HEZhen hua2(1.TheInstituteofGeologicalandNuclearSciences,NewZealand;2.StateKeyLaboratoryofOilandGasReservoirGeologyandExploitation,ChengduUniversityofTechnology,China)Abstract:Analgorithmisintrod…     

An Index mechanism for multi-scale view in spatial databases

There are numerous geometric objects stored in the spatial databases. An importance function in a spatial database is that users can browse the geometric objects as a map efficiently. Thus the spatial database should display the geometric objects users concern about swiftly onto the display window. This process includes two operations:retrieve data from database and then draw them onto screen. Accordingly, to improve the efficiency, we should try to reduce time of both retrieving object and displaying them. The former can be achieved with the aid of spatial index such as R-tree, the latter require to simplify the objects. Simplification means that objects are shown with sufficient but not with unnecessary detail which depend on the scale of browse. So the major problem is how to retrieve data at different detail level efficiently. This paper introduces the implementation of a multi-scale index in the spatial database SISP (Spatial Information Shared Platform) which is generalized from R-tree. The difference between the generalization and the R-tree lies on two facets: One is that every node and geometric object in the generalization is assigned with a importance value which denote the importance of them, and every vertex in the objects are assigned with a importance value,too. The importance value can be use to decide which data should be retrieve from disk in a query. The other difference is that geometric objects in the generalization are divided into one or more sub-blocks, and vertexes are total ordered by their importance value. With the help of the generalized R-tree, one can easily retrieve data at different detail levels.Some experiments are performed on real-life data to evaluate the performance of solutions that separately use normal spatial index and multi-scale spatial index. The results show that the solution using multi-scale index in SISP is satisfying.     

海南岛地体及其毗邻陆缘晚中生代—新生代古地磁研究和构造演化

本文叙述了对海南岛及其毗邻大陆边缘白垩纪到第四纪地层岩石进行古地磁研究的全部工作过程。通过分析岩石中剩余磁矢量的磁偏角及磁倾角的变化,提出海南岛白垩纪以来经历的构造演化模式如下:早期伴随顺时针旋转而向南迁移,后期伴随逆时针转动并向北运移。联系该地区及邻区的地质、地球物理资料,对海南岛上述的构造地体运动提出以下认识:北部湾内早期有一拉张作用,主要是该作用使湾内地壳显著伸长减薄,形成北部湾盆地。从而导致了海南岛的早期构造运动,而海南岛后期的构造运动则主要是受南海海底扩张的影响。海南地体运动规律的阐明对于了解北部湾油气盆地的形成演化有重要的理论和实际意义。     

Exciton Seebeck in Molecular Systems

Various applications relevant to the exciton dynamics,such as the organic solar cell,the large-area organic light-emitting diodes and the thermoelectricity,are operating under temperature gradient.The potential abnormal behavior of the exicton dynamics driven by the temperature difference may affect the efficiency and performance of the corresponding devices.In the above situations,the exciton dynamics under temperature difference is mixed with     

Achieving Unusual States of Matter Under High Pressure

The elongation method,originally proposed by Imamura was further developed for many years in our group.As a method towards O(N)with high efficiency and high accuracy for any dimensional systems.This treatment designed for one-dimensional(ID)polymers is now available for three-dimensional(3D)systems,but geometry optimization is now possible only for 1D-systems.As an approach toward post-Hartree-Fock,it was also extended to     

《Chinese Science Bulletin》SUBJECT INDEX TO VOLUME 59(2014)

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An on-line scaling method for improving scalability of a database cluster

The explosive growth of the Internet and database applications has driven database to be more scalable and available, and able to support on-line scaling without interrupting service. To support more client's queries without downtime and degrading the response time, more nodes have to be scaled up while the database is running. This paper presents the overview of scalable and available database that satisfies the above characteristics. And we propose a novel on-line scaling method. Our method improves the existing on-line scaling method for fast response time and higher throughputs. Our proposed method reduces unnecessary network use, i.e. , we decrease the number of data copy by reusing the backup data. Also, our on-line scaling operation can be processed parallel by selecting adequate nodes as new node. Our performance study shows that our method results in significant reduction in data copy time.     

An improved R-tree based on childnode''s probability

R-Tree is a good structure for spatial searching. But in this indexing structure,either the sequence of nodes in the same level or sequence of traveling these nodes when queries are made is random. Since the possibility that the object appears in different MBR which have the same parents node is different, if we make the subnode who has the most possibility be traveled first, the time cost will be decreased in most of the cases. In some case, the possibility of a point belong to a rectangle will shows direct proportion with the size of the rectangle. But this conclusion is based on an assumption that the objects are symmetrically distributing in the area and this assumption is not always coming into existence. Now we found a more direct parameter to scale the possibility and made a little change on the structure of R-tree, to increase the possibility of founding the satisfying answer in the front sub trees. We names this structure probability based arranged R-tree (PBAR-tree).     

Integrating GIS Web services based on mediating architecture

The geographic information service is enabled by the advancements in general Web service technology and the focused efforts of the OGC in defining XML-based Web GIS service. Based on these models, this paper addresses the issue of services chaining,the process of combining or pipelining results from several interoperable GIS Web Services to create a customized solution. This paper presents a mediated chaining architecture in which a specific service takes responsibility for performing the process that describes a service chain. We designed the Spatial Information Process Language (SIPL) for dynamic modeling and describing the service chain, also a prototype of the Spatial Information Process Execution Engine (SIPEE) is implemented for executing processes written in SIPL. Discussion of measures to improve the functionality and performance of such system will be included.