Novel records and observations of the barnacle Stephanolepas muricata (Cirripedia: Balanomorpha: Coronuloidea); including a case for chemical mediation in turtle and whale barnacles

We report new distribution and host records of the turtle barnacle Stephanolepas muricata Fischer. Ours is the first study to document this species' occurrence in Mexico and in the Atlantic Ocean (North Carolina, Georgia and Florida: USA). We also present the first record of S. muricata from olive ridley sea turtles, Lepidochelys olivacea (Eschscholtz). We discuss the physical and ecological characteristics associated with the specimens collected and present evidence suggesting the likelihood of chemical mediation between embedding coronuloid barnacles like S. muricata and host turtles. We provide the first data on the diet and fecundity of S. muricata.     

Effects of fragmentation on genetic variation in populations of the terrestrial earthworm Drawida japonica Michaelsen, 1892 (Oligochaeta,Moniligastridae) in Shandong and Liaodong peninsulas,China

Earthworms are excellent indicators of landscape fragmentation due to their widespread distribution and poor dispersal abilities over water. Based on field studies conducted in the Shandong and Liaodong peninsulas and their associated islands during summer 2009, we analysed the genetic variation of Drawida japonica Michaelsen, 1892 (Oligochaeta, Moniligastridae) using DNA sequences of the 16S and 28S ribosomal genes in samples obtained from 13 localities, 12 of which were islands, one artificially connected to the mainland by man (Yangma SC). We identified 55 haplotypes among 79 samples, based on 1094 bp, including 47 unique haplotypes. The phylogenetic tree topologies showed two distinct clades. A multiple-apex Poisson distribution using a mismatch analysis of nucleotides was also detected. Results of a Tajima D neutral test were not significant (p > 0.05). Genetic divergence among populations was much larger than within populations. A positive relationship between genetic diversity and island area was revealed, but no significant correlation between genetic diversity and distance to the nearest larger landmass was found. These results indicate that the intraspecific genetic diversity of D. japonica has been influenced by geographic isolation (i.e. island habitat). Passive transport via anthropogenic activities or nonhuman vertebrates (birds or mammals) may also play a key role in dispersal.     

Carapace epibionts of loggerhead turtles (Caretta caretta) nesting at Canaveral National Seashore,Florida

A survey of the epibionts inhabiting the carapace of loggerhead sea turtles Caretta caretta (Linnaeus) nesting on Canaveral National Seashore, Florida was conducted from 2003–2004. Epibionts were sampled and identified to the lowest taxonomic level possible. Eleven newly documented epibiont species were observed from 52 individual loggerheads. We present the first records of sea urchins as loggerhead epibionts. Data are presented on the behavioural, physical, and ecological characteristics of some of these newly documented species to understand better the relationship between loggerhead turtles and their epibiota.     

Motile homes: a comparison of the spatial distribution of epibiont communities on Mediterranean sea turtles

Understanding the ecological roles performed by an individual species requires knowledge from a wide range of disciplines; here we analyze the epibiont–host relationship found in marine turtles. During the study we recorded five new species of sea turtle epibiont: Laomedea flexuosa, Caprella fretensis, Hyale nilssoni, Hyale schmidti, Parasinelobus chevreuxi; as part of a total of nine zoological epibionts present on 35 female green turtles (Chelonia mydas) and 100 loggerhead turtles (Caretta caretta) nesting in Cyprus. The two most commonly occurring epibionts were acorn barnacles Chelonibia testudinaria and Chelonibia caretta, with larger specimens of both species recorded on loggerhead turtles. We analyzed the spatial distribution of these two barnacle species upon the carapaces of their hosts. Specimens of C. testudinaria situated on the anterior half of the carapace were larger than those located at the posterior. A significantly larger proportion of loggerhead turtles (52.5%) hosted epibionts in comparison to green turtles (30.3%). All non-barnacle epibionts were associated with either posterior algal mats or carapace scars.     

Egestion of plant propagules by turtles in a small Massachusetts river

ABSTRACT

Evidence from flowing-water habitats has confirmed a role of turtles regarding the effective internal transport and viability of riparian plant seeds. We assessed potential propagule dispersal by Eastern painted turtles (Chrysemys picta) within a small river in Massachusetts and factors that may influence the diversity and abundance of egested propagules. From August–October 2015 and June–October 2016, we captured 69 turtles (28 male and 13 female), recorded standard measurements (sex, size, mass, BCI), and collected their faeces from which we isolated propagules. Propagules, mostly seeds, were observed in a small (28%) group of individuals. Overall, 4808 seeds of four taxa and 62 tubers were recovered. Most turtles (58%) defaecated propagules of just one taxon and number of seeds per turtle was highly variable (1–1506, 253.05 ± 414.55 seeds). Taxon richness, abundance, and Simpson Index of propagules varied significantly by sampling year. Sex-year interaction was also a significant predictor of propagule abundance. No turtle-specific features (sex or BCI) have any significant influence on any of the seeds egested. While our study suggests a minor role for C. picta as mobilisers of river plant propagules, these highly vagile animals may still create intermittent links between spatially isolated populations within and between waterbodies.     

Bythinella Moquin-Tandon, 1856 (Gastropoda: Rissooidea: Bythinellidae) in Romania: species richness in a glacial refugium

The buff-throated partridge, Tetraophasis szechenyii Madarász, 1885, is a species endemic to west China. The complete mitochondrial genome of this species was sequenced. It was 16,706 base pairs (bp) in length and contained 13 protein-coding genes, 2 ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a control region (CR). The phylogenetic relationships of the buff-throated partridge and 19 other Phasianidae species were inferred by Bayesian inference and maximum likelihood analyses based on 12 protein-coding genes. With the exception of a few nodes, most internal branches were supported by a high Bayesian posterior probability (BPP?=?1.0). The resulting trees clarified the phylogenetic position of T. szechenyii within Phasianidae. The genetic diversity and population structure of the Pamulin population of T. szechenyii were examined based on the mitochondrial DNA CR. Nucleotide sequence analysis defined 18 haplotypes in 24 individuals. Haplotype diversity (h) was 0.953 and nucleotide diversity (π) was 0.0044. The results revealed that the genetic diversity of this population was not particularly low. Combined with the field work conducted by our lab, we found that members of the Pamuling population are cooperative breeders and the population may contain individuals from neighbouring groups. Our work provided genetic background information for the conservation and management of this species.     

Traditional and geometric morphometric analyses reveal homogeneity in European Scutacarus acarorum Goeze, 1780 populations (Acari: Scutacaridae: Heterostigmatina)

The mite Scutacarus acarorum (Scutacaridae, Heterostigmatina) is one of the dominant bumblebee inquilines in the Holarctic. The wide distribution and the host generalist behaviour of S. acarorum suggest that it could be a group of multiple cryptic species. European S. acarorum populations and a small population from New York were studied using traditional and geometric morphometric methods to detect possible geographical or host-dependent variation. The analyses revealed homogeneity of all populations, suggesting that the species experienced a bottleneck during the last ice age and that gene flow between the populations is maintained. High variability within populations indicates a high genetic diversity. No host-related morphological differences were detected, suggesting that S. acarorum is a true generalist. Fresh mite samples from locations all over the Holarctic are needed to draw further conclusions on the species’ phylogeography and also on its population genetic structure.     

The inland mangroves of Inagua

Summary

Mangroves located 50 km inland in the Lake Windsor basin in Inagua are described and compared with the island coastal mangroves. Measurements of soil and surface water salinity yielded high values typical of arid climates. Avicennia germinans and Laguncularia racemosa were found growing in the higher salinity soils while Rhizophora mangle was found fringing inland ocean holes with low salinities. Conocarpus erecta grew in elevated ridges. Scrub mangroves grow in the most extreme conditions of high salinity or over rocky soils. It is postulated that fresh sea water flows from ocean holes into the large Lake Windsor basin where high evaporation concentrates salts. Storms leach salts and maintain stable salinity conditions. Thus, the inland mangroves are not isolated from the sea but critically dependent on it as a source of fresh sea water. A critical examination of the data presented for the island of Barbuda by Stoddart, Bryan and Smith (1973) supports the idea that inland mangroves are connected to the sea.     

Genetic and morphometric variation of the Blackcap (Sylvia atricapilla) on the Azores Archipelago reveals a recent range expansion

ABSTRACT

The Blackcap, Sylvia atricapilla, is one of the few passerine species that breeds in all the Macaronesian archipelagos. The sedentary habits of these populations contrast with the migratory populations from the Western Europe. However, little is known for Azorean populations. We assessed the phylogeography of populations from the Azores based on sequences of two mitochondrial genes and one nuclear gene in the Z-chromosome. We also analysed differences in eight morphometric characters from a total of 282 Blackcaps from all the Azores islands. Our results suggest the occurrence of historical and/or current gene flow among birds from all the islands. Blackcaps from the Azores are close relatives of those from Madeira and Portugal, indicating a recent range expansion to the Azores in the last 0.1 million years. The analysis of morphometric data showed a high morphological diversity among and within the islands, probably related to ecological traits.     

Comparative genetic differentiation study of three coexisting mangrove crabs in western Atlantic

ABSTRACT

A multispecies approach may reveal the factors influencing the genetic differentiation of coexisting species along a wide geographic area. Our aim was to compare the genetic differentiation of mangrove crabs coexisting along the western Atlantic in order to verify if there are common barriers, using two mitochondrial DNA markers to quantify genetic differentiation, variance and diversity. In addition, we included a mismatch distribution to check demographic history. Our data revealed that species with similar pelagic larval duration had either high genetic differentiation or the absence of genetic structure. These results can be explained by factors that contribute to genetic differentiation, such as the presence of large estuarine areas (acting as barriers), ocean currents, and larval behaviour. Also, historical events that promoted the isolation of some areas in the past, such as glacial cycles during the Pleistocene, could have caused the observed high levels of genetic divergence in some species.     

Preliminary report on the genetic structure of Glyphoglossus molossus (Anura: Microhylidae) from the Khorat Plateau,north-eastern Thailand

Glyphoglossus molossus, is one of the most economically important amphibians in the Khorat Plateau, north-eastern Thailand. It is categorised as a near-threatened species by IUCN due to over-exploitation. Here, we examined the genetic structure of G. molossus using partial mitochondrial cytochrome-b gene sequences from specimens collected at 11 localities. The sequence analysis revealed the presence of 15 haplotypes, 5 of which are shared by 2 or more populations, and 10 haplotypes that are confined to a single population. The relatively low haplotype (h) and nucleotide (π) diversities suggest that the Phu Phan Mountain Range is not high enough to act as an effective dispersal barrier between the Sakon Nakhon and Khorat Basins. However, AMOVA and phylogenetic analyses based on Maximum likelihood (ML) and Bayesian inference (BI) strongly supported the presence of two genetically divergent clades, Sakon Nakhon Basin and the northern part of the Khorat Basin (clade A) and the southern part of the Khorat Basin (clade B). These two lineages are separated by substantial geographical distance, which has putatively resulted in a reduction of gene flow. Further studies, with more extensive genetic sampling, especially from throughout the species range will aid in better interpreting our results.     

Habitat utilization by juvenile hawksbill turtles (Eretmochelys imbricata,Linnaeus, 1766) around a shallow water coral reef

Contemporary studies of sea turtle diving behaviour are generally based upon sophisticated techniques such as the attachment of time depth recorders. However, if the risks of misinterpretation are to be minimized, it is essential that electronic data are analysed in the light of first-hand observations. To this aim, we set out to make observations of juvenile hawksbill turtles (Eretmochelys imbricata, Linnaeus, 1766) foraging and resting in a shallow water coral reef habitat around the granitic Seychelles (4°'S, 55°'E). Data were collected from six study sites characterized by a shallow reef plateau (<5 m) and a flat sandy area at the base of the reef face (<10 m). Observation data were categorized into the following behaviours: (1) stationary foraging; (2) active foraging; (3) resting; and (4) assisted resting. Central to this investigation was the development of a technique for accurately estimating the size of sea turtles in situ based upon previously tested techniques for reef fishes. This revealed that through calibration, the curved carapace length (CCL) of marine turtles can be consistently estimated to within 10 cm of their actual size. Although rudimentary, this has advantages for assessing the residency or absence of specific life history stages from particular environments. Indeed, our data supported previous claims that following the reproductive season, adult hawksbills in the region may move away from the nesting beaches to alternative foraging grounds whilst immature turtles (following the pelagic juvenile stage) may opt to reside in areas close to their natal beaches. With regards to habitat utilization, juvenile hawksbills displayed an alternating pattern of short, shallow foraging dives followed by deeper, longer resting dives. These findings are consistent with previous electronic studies of free-range diving in this species and suggest that the maximization of resting duration may be an important factor driving this behaviour.     

Sequence variation of mitochondrial DNA ND5 in captive South China tigers (Panthera tigris amoyensis)

This paper represents the first study of the genetic diversity of captive South China tigers Panthera tigris amoyensis by sequence variation in a fragment of mitochondrial DNA (mtDNA) NADH dehydrogenase subunit 5 (ND5) gene. Two haplotypes (haplotype I and haplotype II) were identified and the captive population had a bias towards haplotype I. This subspecies as a whole demonstrated an extremely low level of genetic diversity with the nucleotide diversity of 0.057±0.021%. The mtDNA ND5 variations detected in the present study could provide significant information to the studbook data of the South China tiger.     

Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus)

ABSTRACT

The subgenus Mantidactylus is a group of frogs endemic to Madagascar, including the largest anuran species on the island. Although these frogs are common and widely distributed, their taxonomy remains unclear. Two species are currently recognised, M. grandidieri and M. guttulatus, with another available name, Rana pigra, considered to be a synonym of M. grandidieri. However, molecular studies have suggested the presence of several cryptic species within the group. Additionally, due to the lack of prominent morphological features, allocating the available names to evolutionary lineages has proven challenging. In the present study, we take a first step towards solving these problems by using fragments of the 16S mitochondrial gene and RAG1 nuclear gene from all over the range of the subgenus to describe its genetic diversity. We also use a newly designed target enrichment laboratory protocol to sequence three mitochondrial fragments from five name-holding museum specimens (as old as 120 years) in order to determine to which lineages the existing names should be applied. The study of the 16S mitochondrial gene revealed 7 geographically separated lineages, distinct enough to be considered candidate species. Out of the five museum specimens analysed, four successfully yielded DNA sequences and could be attributed to one of the aforementioned lineages. Therefore, the name Mantidactylus grandidieri should be applied to the populations from North-Eastern Madagascar, while M. guttulatus refers to populations from inland localities along the Eastern coast of the island. On the other hand, the holotype of Rana pigra did not yield enough genetic material to allow definitive identification. While our data were not sufficient to assess the status of the four lineages distributed along the Eastern coast, the populations from North-Western Madagascar were highly distinct on both the mitochondrial and nuclear markers. We thus describe them as a new species, M. radaka sp. nov.

http://www.zoobank.org/urn:lsid:zoobank.org:pub:1EDDAF0D-FE37-490A-B09E-E136A0C5CB35     

Studies on the cheilostome bryozoan fauna of the Aegean island of Chios

Summary

Collections of cheilostome Bryozoans from shallow water communities around Chios yielded 101 species. Of these, 15 are rare or little known species and eight are reported from the Mediterranean for the first time. Four new species are described.

The Bryozoan benthos of the eastern Mediterranean differs in several ways from that of the western basin. In particular, a high proportion of endemic species was noted, some of which are restricted to the eastern Mediterranean. Decreased proportions of Atlantic species may be explained either by the recent immigration of such species into the Mediterranean as a whole or by the existence of barriers to migration between the east and west basins of the sea. No firm evidence of the existence of Tethyan relics is found, but the occurrence of a number of species on the West African coast, in the Mediterranean and throughout the Indo-West-Pacific suggests very ancient distribution patterns.

Notes on relative abundance, and utilization of different substrata are included.     

Synopsis and taxonomic revision of three genera in the snake tribe Sonorini

ABSTRACT

Delimiting species is a crucial goal of integrative biology, and yet can be misled by homoplasy and high levels of morphological variation. The snake tribe Sonorini contains three genera that have long confounded taxonomists: Chilomeniscus, Chionactis and Sonora. Dynamic colour evolution in this group, including rampant geographic variation in colour and colour polymorphism, has led to a chaotic taxonomy. We used mitochondrial and high-throughput nuclear data (ddRADseq) and complete taxonomic sampling of each genus to reconstruct phylogenetic relationships and systematically revise the genus. Our research revealed that Sonora is paraphyletic with regards to Chilomeniscus and Chionactis and that at least one species (S. semiannulata) is paraphyletic with respect to at least one other recognized species. Additionally, we found substantial undescribed genetic diversity within multiple species which is incongruent with morphological variation in coloration. Accordingly, we proposed synonymizing Chionactis and Chilomeniscus with Sonora, which has taxonomic priority over both genera. As we found genetic evidence that supported some of the historically delimited diversity within multiple taxa, we revised species-level taxonomy accordingly. This new taxonomy recognizes a revised genus of Sonora that contains 15 species of diminutive and often brightly coloured snakes that are distributed from central Mexico to north-western USA.

http://www.zoobank.org/urn:lsid:zoobank.org:pub:45A553D8-6435-4E0A-84ED-DF31E2CCD872     

Patterns of prey use in four sympatric species of Philanthus (Hymenoptera: Sphecidae) with a review of prey selection in the genus

Summary

Observations were made on four sympatric species of sphecid wasps of the genus Philanthus that nest in late summer and prey upon Hymenoptera. All four species nest in a restricted locale, but with little overlap in nesting areas. Comparison of nest contents of females demonstrated limited overlap in prey utilization among the four species, but only when both size and taxonomic category of prey were considered. The ultimate cause of this resource partitioning is unknown. Review of 30 populations of 16 species of North American Philanthus reveals varying degrees of specialization on prey types. Although populations of one species, separated in either time or space, tend to have similar niche breadths, this is not always the case. Intra-and inter-populational comparisons of prey records suggest behavioural plasticity allowing response to variations in prey availability. Some of the divergence in prey use among species is due to differences in predator size.     

Genetic differentiation and gene flow of Porcellionides pruinosus (Crustacea: Isopoda: Oniscidea) in Tunisia

Iso-enzymatic polymorphism analysis was carried out on Tunisian populations of Porcellionides pruinosus to clarify their confused taxonomic status, previously revealed by reproductive and morphological approaches. Seventeen allozyme loci were studied, using horizontal starch gel electrophoresis, in 230 adult specimens belonging to nine populations of P. pruinosus located in north, central and south Tunisia, to assess the levels of their intra-genetic and inter-genetic diversity, and to analyse their genetic structure. Our results indicate a low genetic variability with a polymorphism ratio ranging from 29.4% in Tabarka to 47.1% in the Garat Nâam and Raccada populations, and the mean number of alleles per locus was estimated at 1.51 ± 0.15. The direct-count of heterozygosity ranged between 8.1% and 15%. Substantial estimates of demic structuring were found at the total population (F_ST = 0.198), with a generalized and significant heterozygote deficiency detected in every population (with a mean value for all populations of F_IS = 0.372). Genetic distances between the studied populations were low, indicating that they belong to the same species. Nevertheless, the genetic analyses showed the divergence of the population of Tabarka from all the other studied populations, with the lowest mean gene flow, 0.58, and the highest mean genetic distance, (0.182) obtained also by the morphological and reproductive approaches.     

Morphology and composition of the internal axis in two morphologically contrasting deep-water sea pens (Cnidaria: Octocorallia)

Umbellula encrinus Linnaeus, 1758 and Anthoptilum grandiflorum (Verrill, 1879) are two species of deep-water sea pens (Cnidaria: Octocorallia) commonly found in the Northwest Atlantic. These sea pens are frequently caught as fishing bycatch, but little is known about their biology. Here we characterise the internal skeleton (axis) of these two morphologically contrasting species, in terms of axis carbonate composition and proportion, morphology and metrics (i.e. cross-sectional area and weight) through gradients along their lengths. Using the conspicuous growth rings present in the axis of U. encrinus we also estimated intra-colonial variation in radial growth rates for this species. X-ray diffraction (XRD) analyses revealed that the carbonate portion of the axis is composed of magnesian calcite (Ca, Mg)CO₃ in both species. On average, the axis is composed of 71% carbonate material in U. encrinus, and 65% carbonate in A. grandiflorum. The carbonate proportion was greatly reduced from base (71%) to tip (33%) in the axis of U. encrinus, while in A. grandiflorum changes were less abrupt (~6% difference from base to tip). In U. encrinus, the axis is quadrangular in shape through its whole length, twisting longitudinally. Twisting can occur in both clockwise and anti-clockwise directions. The axis of A. grandiflorum varied from elliptical near the base to cylindrical through most of the remaining length, with no twisting observed. Axes’ cross-sectional areas also decreased with distance from the base in both species, being the largest near the base. Estimated radial growth rates in U. encrinus were variable within a single colony, ranging between 0.04 and 0.08 mm.yr^?1. This is the first study to describe changes along the axes of sea pens, and to characterise the axes in the studied species. It provides a baseline for studies considering sea pens’ skeletons (e.g. ocean acidification and palaeoceanography).