Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans

Chromosomes are divided into domains of open chromatin, where genes have the potential to be expressed, and domains of closed chromatin, where genes are not expressed. Classic examples of open chromatin domains include 'puffs' on polytene chromosomes in Drosophila and extended loops from lampbrush chromosomes. If multiple genes were typically expressed together from a single open chromatin domain, the position of co-expressed genes along the chromosomes would appear clustered. To investigate whether co-expressed genes are clustered, we examined the chromosomal positions of the genes expressed in the muscle of Caenorhabditis elegans at the first larval stage. Here we show that co-expressed genes in C. elegans are clustered in groups of 2-5 along the chromosomes, suggesting that expression from a chromatin domain can extend over several genes. These observations reveal a higher-order organization of the structure of the genome, in which the order of the genes along the chromosome id correlated with their expression in specific tissues.     

A hypersensitive site in hsp70 chromatin requires adjacent not internal DNA sequence

Nuclease-hypersensitive sites in chromatin exist at the 5' side of many eukaryotic genes. To gain some understanding of the molecular basis of these hypersensitive sites, we have now examined the pair of sites upstream of the Drosophila hsp70 gene in a series of plasmids that contain deletions in the hypersensitive region and have been transformed into yeast cells. Hypersensitive sites 5' to a Drosophila hsp70 gene are preserved when this gene is introduced into yeast by transformation. We find that a yeast strain containing a plasmid in which the deletion extends through the first hypersensitive site still displays the normal pair of hypersensitive sites, so DNA sequences over which the first hypersensitive site is centred are not required for hypersensitivity at this position and the site can form over a foreign DNA sequence juxtaposed against this deletion end point. Deletions progressing further into the region bracketed by the pair of 5' hypersensitive sites eliminate the first hypersensitive site and alter the downstream site. We propose that the hypersensitive sites are generated through the binding of a protein that renders flanking sequences more accessible to nucleases, perhaps by preventing normal chromatin packaging.     

Transgenes as probes for active chromosomal domains in mouse development

Embryonic development entails a well defined temporal and spatial programme of gene expression, which may be influenced by active chromosomal domains. These chromosomal domains can be detected using transgenes which integrate randomly throughout the genome, as their expression can be affected by chromosomal position. Position effects are probably exerted most strongly on transgenes that do not contain strong promoters, enhancers or other modulating sequences. Here we have systematically explored position effects using a transgene with the weak herpes-simplex-virus thymidine-kinase promoter, linked to the readily visualized lacZ indicator gene (HSV-TK-lacZ). Each transgenic fetus with detectable expression displayed a unique lacZ staining pattern. Thus expression of this construct is apparently dictated entirely by its chromosomal position, without any construct specificity. Furthermore the transgene is faithfully transmitted to subsequent generations, allowing for systematic mapping of changes in expression during development and in adult life. These results demonstrate that transgenes can indeed be powerful tools to probe the genome for active chromosomal regions, with the potential for identifying endogenous genes involved in organogenesis and pattern formation.     

High-affinity binding site for a specific nuclear protein in the human IgM gene

Proteins binding to specific regions of DNA with high affinity frequently govern or regulate reactions at the gene level. We have identified a high-affinity binding site in the immunoglobulin mu gene that binds a specific nuclear protein, and have now characterized it fully using nuclear factor 1 (NF-1), a protein purified from the nuclei of HeLa cells and required for the in vitro replication of adenovirus (Ad) DNA. NF-1 protects a 25-base pair (bp) double-stranded segment of DNA which shares a consensus sequence, 5' TGGA/CNNNNNGCCAA 3', with similar binding sites in the Ad-5 terminal repeat and the human c-myc gene. Although this site differs from the enhancer region, a biological function is suggested by the fact that it is DNase I hypersensitive in immunoglobulin-producing lymphoblastoid cells. The binding site for the NF-1 protein in the mu gene, by analogy with the site in the Ad-5 terminal repeat, may represent one component of a cellular origin of replication; alternatively, it may be responsible for the activation of the chromatin in this region.     

毛囊特异表达载体pCDsR-UI的构建以及绒山羊胎儿成纤维细胞的体外转染和筛选

构建IGF1基因的毛囊特异表达载体,可为今后通过体细胞核移植技术建立转基因克隆绒山羊准备核供体细胞.将绵羊IGF1 cDNA序列,连接到含有UHS启动子序列的克隆载体p19TU的SalI、SphI位点,获得过渡质粒载体p19TUI;pCDsRed2和过渡质粒载体分别经酶切和连接构成表达载体pCDsR-UI.以组织块贴附法分离和培养绒山羊胎儿成纤维细胞,外源性表达载体以脂质体方法转染所培养的第2代成纤维细胞,DMEM/F12+ 10％ FBS、37℃5％CO2中培养,经添加G418筛选,获得了稳定表达红色荧光蛋白的细胞克隆,经特异性PCR鉴定证实外源基因已经整合在细胞基因组中.转基因前后分析细胞生长曲线和染色体核型证明转基因细胞的生长状态良好、各项参数正常.     

Dependence of position-effect variegation in Drosophila on dose of a gene encoding an unusual zinc-finger protein

Position-effect variegation is the inactivation in some cells of a gene translocated next to heterochromatin, the region of the chromosome that is permanently condensed. The number of copies of the Drosophila gene Suvar(3)7 is a dose-limiting factor in this phenomenon, and seems from its sequence that it encodes a protein with five widely spaced zinc-fingers. This novel arrangement of zinc-fingers could help in packaging the chromatin fibre into heterochromatin, and also reflect a novel method of controlling the expression from DNA domains.     

Maintenance of functional equivalence during paralogous Hox gene evolution

Biological diversity is driven mainly by gene duplication followed by mutation and selection. This divergence in either regulatory or protein-coding sequences can result in quite different biological functions for even closely related genes. This concept is exemplified by the mammalian Hox gene complex, a group of 39 genes which are located on 4 linkage groups, dispersed on 4 chromosomes. The evolution of this complex began with amplification in cis of a primordial Hox gene to produce 13 members, followed by duplications in trans of much of the entire unit. As a consequence, Hox genes that occupy the same relative position along the 5' to 3' chromosomal coordinate (trans-paralogous genes) share more similarity in sequence and expression pattern than do adjacent Hox genes on the same chromosome. Studies in mice indicate that although individual family members may have unique biological roles, they also share overlapping functions with their paralogues. Here we show that the proteins encoded by the paralogous genes, Hoxa3 and Hoxd3, can carry out identical biological functions, and that the different roles attributed to these genes are the result of quantitative modulations in gene expression.     

人生长激素基因转化的小鼠胚胎干细胞特性的研究

报道了携带人生长激素基因（ｈＧＨ）的逆转录病毒载体ｐＩＮＳ－ＧＨ导入小鼠胚胎干细胞（ＥＳ细胞）ＣＣＥ后，虽然用放射免疫法未检测到ｈＧＨ基因的表达，但是，Ｓｏｕｔｈｅｒｎ杂交的结果表明，ｈＧＨ基因的确已经整合到细胞基因组中。对转化的ＥＳ细胞克隆进行了体内外分化能力及嵌合能力的检验，结果表明，经过一系列体外操作的ＥＳ细胞，仍具有分化成多种细胞类型的能力。转化的ＥＳ细胞通过显微注射注入囊胚后，能参与受体     

重组大鼠溶菌酶N端多肽的原核表达及其对晚期糖基化终产物的结合作用

目的:探讨溶菌酶N端多肽片段基因的重组并在原核中表达,研究该片段与晚期糖基化终产物(advanced glycation end products,AGEs)的结合作用。方法:从SD大鼠外周血白细胞中抽提总RNA,经逆转录并扩增大鼠溶菌酶N端基因片段,以质粒pET-30 a( )为载体构建表达质粒pLY77。含pLY77的工程菌Rosetta(DE3)经IPTG诱导,对该重组多肽进行高效表达。表达产物经N i -NTA琼脂糖柱层析纯化后,得到的溶菌酶N端多肽片段LY77经SDS-PAGE和W estern印迹法鉴定,ELISA法分析体外结合活性。结果:LY77在Rosetta(DE3)中高效表达,主要以可溶性蛋白的形式存在,相对分子质量约为11 000;LY77对体外制备的晚期糖基化蛋白BSA-AGEs具有显著的结合活性。结论:LY77对AGEs具有很高的亲和力,为进一步探讨LY77可能应用于体内促进AGEs的清除和参与免疫调节作用奠定基础。     

DNA triplet repeats mediate heterochromatin-protein-1-sensitive variegated gene silencing

Gene repression is crucial to the maintenance of differentiated cell types in multicellular organisms, whereas aberrant silencing can lead to disease. The organization of DNA into chromatin and heterochromatin is implicated in gene silencing. In chromatin, DNA wraps around histones, creating nucleosomes. Further condensation of chromatin, associated with large blocks of repetitive DNA sequences, is known as heterochromatin. Position effect variegation (PEV) occurs when a gene is located abnormally close to heterochromatin, silencing the affected gene in a proportion of cells. Here we show that the relatively short triplet-repeat expansions found in myotonic dystrophy and Friedreich's ataxia confer variegation of expression on a linked transgene in mice. Silencing was correlated with a decrease in promoter accessibility and was enhanced by the classical PEV modifier heterochromatin protein 1 (HP1). Notably, triplet-repeat-associated variegation was not restricted to classical heterochromatic regions but occurred irrespective of chromosomal location. Because the phenomenon described here shares important features with PEV, the mechanisms underlying heterochromatin-mediated silencing might have a role in gene regulation at many sites throughout the mammalian genome and modulate the extent of gene silencing and hence severity in several triplet-repeat diseases.